Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10487

Metabolite ID
P10487
Deionized mass
832.2090 Da
Average m/z
833.2224
Average RT
10.4564
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
100
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

100 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.839e-11
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)7.456e-14
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)5.192e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.402e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.54e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.456e-15
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.617e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.701e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.701e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.068e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.509e-14
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)1.752e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)4.874e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.087e-13
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)1.135e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.869e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.01e-14
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)7.031e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.83e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.146e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.987e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)7.003e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.473e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.881e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.881e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.96e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.322e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.322e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.322e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.61e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.206e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.167e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.055e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.237e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.237e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.666e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.186e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.282e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)9.143e-11
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)6.728e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)8.922e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.779e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.779e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.839e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.839e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)9.749e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)3.46e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.749e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.612e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)5.204e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.959e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.402e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.402e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.402e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.402e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.799e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.525e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.611e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.633e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.633e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.633e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.633e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.217e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.645e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.181e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.466e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.466e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.556e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.942e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.942e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.964e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.105e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.456e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)7.823e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.319e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.617e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.647e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.647e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.701e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.241e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)6.439e-15
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.302e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.062e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.097e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.919e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.828e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.969e-12
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)5.981e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.802e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.631e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)9.561e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.376e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.287e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.287e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)5.077e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.694e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.695e-17
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)3.658e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.416e-11
Glyma.20G114400 hypothetical protein AT1G68585:AT1G68585:uncharacterized protein 1Chr20:35614355–35616709 (-)3.374e-11