Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10485

Metabolite ID
P10485
Deionized mass
659.2251 Da
Average m/z
660.2357
Average RT
10.4558
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
64
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

64 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)9.288e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.776e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.498e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.498e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.73e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.318e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)1.59e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.74e-13
Glyma.03G017500 hypothetical protein NA 1Chr03:1761083–1762800 (+)5.351e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.905e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)8.948e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.088e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.16e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.848e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.16e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.27e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.933e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.933e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.646e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)2.368e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)2.368e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)2.912e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.602e-11
Glyma.06G261500 hypothetical protein NA 1Chr06:44829183–44833460 (-)1.654e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.79e-12
Glyma.06G262100 hypothetical protein NA 1Chr06:44913295–44920089 (-)1.067e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)3.546e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)3.546e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.789e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)1.789e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)3.546e-11
Glyma.07G069500 hypothetical protein AT2G45970:CYP86A8:cytochrome P450, family 86, subfamily A, polypeptide 8__AT1G01600:CYP86A4:cytochrome P450, family 86,… 1Chr07:6304097–6306910 (+)2.418e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.282e-11
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)1.678e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.099e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.099e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.776e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.438e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.438e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.498e-13
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.505e-12
Glyma.13G183400 hypothetical protein NA 1Chr13:29666942–29670201 (+)6.859e-11
Glyma.13G184000 hypothetical protein AT1G11120:AT1G11120:CTTNBP 2 amino-terminal-like protein 1Chr13:29775320–29779417 (+)8.105e-11
Glyma.13G199800 hypothetical protein NA 1Chr13:31353786–31356378 (+)5.993e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.847e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.847e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.847e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.775e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)6.881e-13
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)6.881e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.146e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.318e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)1.087e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.101e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.123e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.123e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)6.429e-11
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)7.74e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.87e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.082e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.082e-12
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)8.997e-12
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)8.997e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.251e-12