Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10445

Metabolite ID
P10445
Deionized mass
860.2734 Da
Average m/z
861.2777
Average RT
10.4431
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
93
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

93 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)4.659e-11
Glyma.05G164700 hypothetical protein NA 3Chr05:35543931–35549196 (-)1.083e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)3.686e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)8.314e-12
Glyma.04G129500 hypothetical protein AT3G21060:RBL:Transducin/WD40 repeat-like superfamily protein 2Chr04:18096368–18109438 (+)8.498e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.094e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.966e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.966e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.669e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)8.397e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.506e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.544e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.544e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.835e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)2.512e-11
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)1.829e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.173e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)5.142e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)5.142e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)5.142e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.712e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)1.551e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)3.946e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.45e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.312e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)5.971e-13
Glyma.04G129600 hypothetical protein NA 1Chr04:18110585–18112762 (+)8.498e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.616e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.93e-12
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)2.017e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.691e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.879e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.879e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.714e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.055e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.055e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.055e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.38e-11
Glyma.05G164800 hypothetical protein NA 1Chr05:35549831–35557199 (-)4.782e-11
Glyma.05G166800 SHOOT1 SHOOT1 protein AT1G55480:ZKT:protein containing PDZ domain, a K-box domain, and a TPR region 1Chr05:35731069–35735416 (+)8.558e-11
Glyma.05G182100 hypothetical protein NA 1Chr05:37003489–37004855 (-)4.172e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)7.932e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.226e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.226e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)3.595e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.013e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.094e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.094e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.094e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.094e-11
Glyma.08G182500 hypothetical protein NA 1Chr08:14639429–14643788 (+)3.693e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)4.197e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.11e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.443e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.443e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.443e-12
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)6.842e-13
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.258e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.675e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.675e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.557e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.557e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.966e-13
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)1.477e-13
Glyma.13G142500 hypothetical protein NA 1Chr13:25548232–25550097 (+)9.67e-12
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)2.358e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.686e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)9.173e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.686e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)8.319e-14
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.198e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)7.282e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.048e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.669e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.397e-13
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.059e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.059e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.427e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.411e-14
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)7.291e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)8.314e-12
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)2.305e-11
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)5.791e-12
Glyma.18G050000 hypothetical protein NA 1Chr18:4309070–4316534 (-)3.201e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)7.024e-11
Glyma.18G202600 FAD7-1 omega-3 fatty acid desaturase NA 1Chr18:48365045–48368299 (-)2.107e-11
Glyma.18G273000 hypothetical protein NA 1Chr18:55575628–55582063 (-)1.399e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.506e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.441e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.441e-12
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)2.853e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.374e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.893e-11