Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10437

Metabolite ID
P10437
Deionized mass
149.0476 Da
Average m/z
150.0546
Average RT
10.4404
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 13Chr03:2202325–2234931 (+)3.424e-13
Glyma.03G021000 hypothetical protein NA 5Chr03:2148298–2162954 (-)3.424e-13
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 2Chr03:2124895–2135692 (-)4.766e-16
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 2Chr03:2240686–2246512 (-)5.034e-13
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.304e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 2Chr08:10843433–10846761 (-)4.586e-11
Glyma.08G144000 hypothetical protein NA 2Chr08:10981530–10989743 (+)4.586e-11
Glyma.08G145700 hypothetical protein AT5G64730:AT5G64730:Transducin/WD40 repeat-like superfamily protein 2Chr08:11083230–11086950 (-)2.894e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.086e-11
Glyma.01G031800 hypothetical protein AT1G70300:KUP6:K+ uptake permease 6 1Chr01:3328121–3334148 (+)9.813e-11
Glyma.01G032100 hypothetical protein AT1G23900:GAMMA-ADAPTIN 1:gamma-adaptin 1 1Chr01:3374233–3387279 (+)5.773e-12
Glyma.01G040000 hypothetical protein NA 1Chr01:4336374–4338196 (+)2.532e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)1.249e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)9.066e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)9.386e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)4.604e-12
Glyma.03G020900 hypothetical protein AT3G18030:HAL3A:HAL3-like protein A 1Chr03:2143987–2147131 (-)8.218e-12
Glyma.03G021100 hypothetical protein AT1G12650:AT1G12650:rRNA biosis RRP36-like protein 1Chr03:2162406–2167712 (+)1.914e-11
Glyma.03G021800 hypothetical protein AT3G06310:AT3G06310:Cox19-like CHCH family protein__AT5G18800:AT5G18800:Cox19-like CHCH family protein 1Chr03:2265529–2269179 (+)5.143e-11
Glyma.03G022200 hypothetical protein NA 1Chr03:2326204–2327764 (+)1.827e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.325e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.276e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.67e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.671e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)1.447e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)7.894e-13
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)6.068e-12
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)4.038e-11
Glyma.08G109700 GmJ1 AT4G13830:J20:DNAJ-like 20 1Chr08:8419650–8422508 (+)4.786e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)6.068e-12
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)1.477e-11
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)1.931e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.32e-11
Glyma.08G143000 hypothetical protein AT3G57940:AT3G57940:GNAT acetyltransferase (DUF699)__AT1G10490:AT1G10490:GNAT acetyltransferase (DUF699) 1Chr08:10872816–10885213 (-)4.586e-11
Glyma.08G143200 hypothetical protein AT4G39420:AT4G39420:spatacsin carboxy-terminus protein 1Chr08:10898111–10922975 (-)4.586e-11
Glyma.08G143400 hypothetical protein NA 1Chr08:10941737–10944154 (+)5.757e-11
Glyma.08G144600 hypothetical protein NA 1Chr08:10997491–11002758 (+)4.586e-11
Glyma.08G144700 hypothetical protein NA 1Chr08:11004138–11009322 (-)4.586e-11
Glyma.08G145900 hypothetical protein AT4G39330:CAD9:cinnamyl alcohol dehydrogenase 9 1Chr08:11092669–11096142 (-)2.894e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)3.804e-12
Glyma.08G147300 hypothetical protein NA 1Chr08:11238871–11242682 (+)5.43e-12
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)6.662e-12
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)8.049e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)9.157e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.24e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.472e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.69e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.204e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.204e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.433e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.528e-14
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.901e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.438e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.901e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.901e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.33e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.114e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)6.841e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)1.278e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)5.933e-13
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.436e-11