Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10420

Metabolite ID
P10420
Deionized mass
257.0891 Da
Average m/z
258.0967
Average RT
10.4368
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)5.742e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)1.498e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.288e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.007e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.191e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.191e-14
Glyma.01G154500 hypothetical protein AT1G31780:AT1G31780:oligomeric golgi complex subunit 1Chr01:49196540–49201707 (+)3.078e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.516e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.283e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.597e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.597e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.597e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.282e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.616e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)4.144e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)8.301e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)1.806e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)1.806e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.392e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)1.392e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)1.806e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)2.501e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.708e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.288e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.288e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.288e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.288e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.877e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.007e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.506e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.506e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.191e-14
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)8.274e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)8.109e-12
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)7.138e-14
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)9.745e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.729e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.1e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.729e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.729e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.272e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.567e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.567e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)5.128e-13