Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10298

Metabolite ID
P10298
Deionized mass
616.0665 Da
Average m/z
617.0774
Average RT
10.4048
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 2Chr03:169480–172727 (+)3.765e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.919e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.168e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.669e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.616e-12
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 2Chr16:33322352–33330062 (+)5.27e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)5.01e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)5.362e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.915e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.915e-13
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.919e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.931e-13
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.044e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.044e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.39e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.335e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.654e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.919e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.919e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.919e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.919e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.532e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.532e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.684e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.766e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.704e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.703e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)3.623e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)1.34e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.081e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.081e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)8.772e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.263e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.263e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)5.858e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.688e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.688e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.917e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.71e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.175e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.683e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.646e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.646e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.646e-11
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)3.497e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.752e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.291e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.201e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.474e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.201e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.201e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.723e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)3.474e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.629e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)6.256e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)5.453e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.954e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.623e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.327e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.52e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.259e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.259e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)4.565e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.827e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.689e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)3.661e-12
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)2.728e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.775e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.775e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.428e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.035e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.267e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.499e-14