Overview Annotation GWAS Evidence Associated genes

P10242

Metabolite ID
P10242
Deionized mass
766.2721 Da
Average m/z
767.2830
Average RT
10.3918
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
14
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

14 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)9.921e-13
Glyma.17G153900 hypothetical protein AT5G46580:AT5G46580:pentatricopeptide (PPR) repeat-containing protein 2Chr17:12919733–12922117 (-)1.806e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.698e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.119e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.981e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.921e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.033e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.984e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.984e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.984e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.99e-11
Glyma.17G154000 hypothetical protein NA 1Chr17:12924078–12925703 (+)9.716e-11
Glyma.17G154300 hypothetical protein AT5G46610:AT5G46610:aluminum activated malate transporter family protein 1Chr17:12986575–12990804 (-)3.235e-12
Glyma.17G154400 hypothetical protein AT1G32530:AT1G32530:RING/U-box superfamily protein__AT2G35330:AT2G35330:RING/U-box superfamily protein 1Chr17:13022389–13028100 (-)2.561e-11