Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10197

Metabolite ID
P10197
Deionized mass
653.2514 Da
Average m/z
654.2553
Average RT
10.3790
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
98
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

98 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)7.356e-13
Glyma.14G149300 hypothetical protein NA 3Chr14:32235308–32258014 (+)1.271e-13
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)1.062e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)7.941e-13
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.783e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.871e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.061e-14
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)2.999e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.817e-11
Glyma.18G201700 hypothetical protein NA 2Chr18:48175554–48180264 (+)7.351e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)1.522e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.36e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)3.022e-12
Glyma.01G047300 hypothetical protein AT1G27090:AT1G27090:glycine-rich protein 1Chr01:5514127–5517339 (+)3.277e-11
Glyma.01G047500 hypothetical protein NA 1Chr01:5528742–5532260 (-)3.277e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)2.776e-13
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)2.776e-13
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)3.692e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.047e-17
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)4.66e-15
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.042e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.146e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)1.357e-11
Glyma.02G304500 hypothetical protein AT5G48300:ADG1:ADP glucose pyrophosphorylase 1 1Chr02:47950037–47954106 (+)2.95e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.15e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.555e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.169e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.2e-13
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)3.97e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.302e-13
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)8.081e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)9.197e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)9.197e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)6.871e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)6.871e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.871e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.871e-11
Glyma.08G171900 hypothetical protein AT3G12950:AT3G12950:Trypsin family protein 1Chr08:13688931–13694431 (+)2.885e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.176e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.136e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.111e-12
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)4.612e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.765e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.367e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.628e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)8.22e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.765e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.006e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.006e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.006e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.006e-12
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)2.502e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)7.39e-11
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)1.236e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.992e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.278e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.228e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.228e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.359e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)9.585e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.084e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.271e-13
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)9.353e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.817e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)4.03e-11
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)2.269e-12
Glyma.15G107800 hypothetical protein AT1G64570:DUO3:Homeodomain-like superfamily protein 1Chr15:8473049–8483746 (+)1.238e-11
Glyma.15G108100 hypothetical protein NA 1Chr15:8500878–8505582 (-)6.289e-11
Glyma.15G109500 hypothetical protein AT4G22030:AT4G22030:F-box protein with a domain protein 1Chr15:8591856–8593774 (-)4.362e-11
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)3.419e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)1.229e-11
Glyma.15G111200 hypothetical protein AT1G11950:AT1G11950:Transcription factor jumonji (jmjC) domain-containing protein 1Chr15:8705907–8710609 (-)7.982e-11
Glyma.15G111900 hypothetical protein NA 1Chr15:8769366–8777275 (-)9.822e-11
Glyma.15G112100 hypothetical protein AT4G04180:AT4G04180:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr15:8796403–8805644 (-)9.822e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.298e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.712e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.298e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.298e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.034e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.824e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.123e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.123e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.265e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.235e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)7.941e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.723e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.723e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.842e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.842e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.624e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)3.505e-13
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 1Chr18:51650951–51654636 (-)3.626e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.224e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.224e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.645e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)1.147e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.115e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)5.926e-11