Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P10051

Metabolite ID
P10051
Deionized mass
530.1855 Da
Average m/z
531.1920
Average RT
10.3422
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)9.109e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.555e-11
Glyma.11G145000 hypothetical protein AT4G27490:RRP41L:3'-5'-exoribonuclease family protein 2Chr11:11117760–11123162 (+)8.749e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.075e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.941e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.857e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.857e-14
Glyma.16G138800 hypothetical protein NA 2Chr16:29609432–29615000 (+)1.505e-13
Glyma.01G021000 hypothetical protein NA 1Chr01:2122589–2125447 (+)3.055e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)7.758e-12
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)1.464e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)1.464e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)1.464e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.27e-17
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)4.923e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.356e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.577e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.008e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)7.061e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)1.337e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.67e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.033e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.92e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.374e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.374e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.139e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)6.837e-12
Glyma.08G303300 hypothetical protein NA 1Chr08:42134782–42139026 (+)1.673e-11
Glyma.08G303400 hypothetical protein NA 1Chr08:42139097–42147365 (+)1.673e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.577e-11
Glyma.09G209900 hypothetical protein AT1G31930:XLG3:extra-large GTP-binding protein 3 1Chr09:43412726–43419532 (+)1.528e-11
Glyma.09G210200 hypothetical protein AT1G31940:AT1G31940:cystic fibrosis transmembrane conductance regulator 1Chr09:43432969–43437575 (-)8.646e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)2.002e-11
Glyma.11G144800 hypothetical protein AT2G28250:NCRK:Protein kinase superfamily protein 1Chr11:11096950–11105343 (+)8.749e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)1.06e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.664e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.664e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.382e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.238e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.238e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)4.214e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)4.453e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.109e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.125e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.699e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.699e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.857e-14
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.373e-11
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)5.654e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.438e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.079e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.197e-17
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.079e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.079e-15
Glyma.16G140700 hypothetical protein NA 1Chr16:29846716–29852078 (-)9.745e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)9.367e-15
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.014e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.852e-14
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.852e-14
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)6.016e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.764e-15
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.203e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.203e-11
Glyma.17G217900 hypothetical protein NA 1Chr17:36771760–36778616 (-)5.132e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.154e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.753e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.753e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.078e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.494e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.462e-11