Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09642

Metabolite ID
P09642
Deionized mass
463.7249 Da
Average m/z
464.7339
Average RT
10.2137
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)2.768e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)1.037e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)2.666e-13
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.261e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.111e-16
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.949e-14
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)4.109e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)8.681e-12
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)2.364e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.463e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.844e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.22e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.781e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.168e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.168e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)4.445e-11
Glyma.06G261500 hypothetical protein NA 1Chr06:44829183–44833460 (-)4.62e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.299e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.128e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)3.083e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)8.221e-13
Glyma.08G117700 hypothetical protein NA 1Chr08:9080318–9084658 (-)1.803e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)8.221e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.275e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.266e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.266e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.266e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.266e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.077e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.299e-17
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.26e-13
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)1.891e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)7.877e-15
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.736e-11
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)5.763e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.919e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.208e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.896e-13
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.106e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.474e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.934e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.638e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.172e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.03e-14
Glyma.18G267200 hypothetical protein NA 1Chr18:55161119–55166101 (-)8.715e-11
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)9.921e-13
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.546e-13
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)2.768e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)8.207e-12