Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09588

Metabolite ID
P09588
Deionized mass
183.1611 Da
Average m/z
184.1680
Average RT
10.1963
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.329e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)2.143e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)9.955e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.149e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.329e-12
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)5.548e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.417e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.597e-14
Glyma.05G147700 hypothetical protein NA 1Chr05:34199925–34202541 (+)4.501e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.204e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.782e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.04e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.635e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.086e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)5.211e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)5.211e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)5.211e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.269e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.809e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.38e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)6.975e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.061e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.061e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.061e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.061e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.444e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.886e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.529e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.529e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.529e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.955e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.286e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.286e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.286e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.216e-13
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)7.055e-12
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)7.055e-12
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)9.694e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)1.863e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)9.459e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.999e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.677e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.999e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.999e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.181e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.837e-16
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)4.346e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)5.618e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.64e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.995e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.867e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.688e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.791e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.042e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.797e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.797e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)7.443e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.784e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)8.474e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.567e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.568e-14