Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09302

Metabolite ID
P09302
Deionized mass
357.0772 Da
Average m/z
358.0854
Average RT
10.1006
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)4.558e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.057e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.351e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.667e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.584e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)6.538e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)4.376e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.499e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)8.958e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.677e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.821e-16
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.582e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)5.355e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.951e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.164e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.645e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.645e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.645e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.749e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.244e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.767e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.057e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.057e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.057e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.057e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.149e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.504e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.704e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.698e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.827e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)7.583e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)7.583e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)7.583e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)7.583e-11
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)6.103e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.164e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.164e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.957e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.958e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)9.046e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.311e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.311e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.802e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)5.99e-11
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)6.006e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)9.117e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)9.141e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.442e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.546e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.442e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.442e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.155e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.316e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.318e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.552e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.153e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.554e-11
Glyma.16G173000 hypothetical protein NA 1Chr16:33365497–33367017 (+)6.021e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.207e-15
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)6.837e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)4.268e-12
Glyma.16G205000 hypothetical protein AT5G62280:AT5G62280:DUF1442 family protein (DUF1442) 1Chr16:36598140–36599460 (+)8.503e-11