Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09289

Metabolite ID
P09289
Deionized mass
284.0974 Da
Average m/z
285.1060
Average RT
10.0974
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.186e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.579e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.122e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)1.515e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.762e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.786e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.786e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)4.164e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)2.969e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.821e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.821e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)5.474e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.461e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.791e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.661e-11
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)1.152e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)6.845e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)9.796e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.319e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.409e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.409e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)5.614e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)5.614e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.98e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.127e-13
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)2.466e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.065e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.065e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1.834e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.274e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.274e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.221e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.221e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.676e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.184e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.794e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.794e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.483e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.483e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.786e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.58e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.58e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.92e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.46e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.353e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.46e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.46e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.696e-11
Glyma.16G053400 hypothetical protein AT3G27000:ARP2:actin related protein 2 1Chr16:5187313–5196238 (-)5.895e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.977e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.489e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.06e-12
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)3.311e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.457e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.704e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.122e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.286e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.286e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.872e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.408e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.408e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.625e-12