Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P09046

Metabolite ID
P09046
Deionized mass
246.1169 Da
Average m/z
247.1256
Average RT
10.0112
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)7.197e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.296e-11
Glyma.11G145000 hypothetical protein AT4G27490:RRP41L:3'-5'-exoribonuclease family protein 2Chr11:11117760–11123162 (+)8.812e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.01e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)3.656e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.568e-14
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.444e-14
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)2.918e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.059e-14
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.424e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.976e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)3.895e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)3.895e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)6.231e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.671e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.671e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.671e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.671e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.237e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)8.675e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)8.675e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.098e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)4.801e-13
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)2.269e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.818e-12
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)1.738e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.517e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.925e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)7.554e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)7.554e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)7.554e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)7.554e-11
Glyma.11G144800 hypothetical protein AT2G28250:NCRK:Protein kinase superfamily protein 1Chr11:11096950–11105343 (+)8.812e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)2.113e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.271e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)9.291e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.085e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.901e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.085e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.085e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.552e-13
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)1.036e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)5.122e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)5.122e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.343e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)7.581e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)7.581e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.016e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.016e-14
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)3.785e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.46e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.01e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.061e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)5.803e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.391e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)7.692e-12