Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P08689

Metabolite ID
P08689
Deionized mass
277.1145 Da
Average m/z
278.1211
Average RT
9.8871
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)7.484e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.132e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.678e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.144e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)9.231e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)7.484e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.762e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.39e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.505e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)3.959e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)3.959e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)3.959e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.757e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.179e-11
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)1.415e-12
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)1.415e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)8.219e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.584e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.602e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.602e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.463e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.003e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.003e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.003e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.126e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.855e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.356e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.024e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.49e-20
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.82e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.132e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.132e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.132e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.132e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.849e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.54e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.54e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)7.023e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.245e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.245e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)8.706e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)7.754e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)7.754e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)7.753e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.796e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)5.972e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)5.972e-11
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)5.371e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.144e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.503e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.662e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.961e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.961e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.177e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)7.791e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.382e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.691e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.038e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.038e-12
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)4.865e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)9.231e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)6.132e-12
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)6.926e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.875e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)8.471e-11