Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P08427

Metabolite ID
P08427
Deionized mass
623.2090 Da
Average m/z
624.2218
Average RT
9.7912
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.021e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.108e-21
Glyma.06G201700 hypothetical protein NA 2Chr06:18577883–18617874 (+)7.595e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.049e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.413e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.413e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.325e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.021e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.76e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.76e-11
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)3.716e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.028e-11
Glyma.03G252800 hypothetical protein AT5G18430:AT5G18430:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr03:44849419–44851672 (+)9.694e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)7.004e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)4.596e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.082e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.329e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)8.749e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)4.674e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)4.674e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.766e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.119e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.68e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.68e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)2.598e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)6.596e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)6.596e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.887e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.604e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)6.142e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.049e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.128e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.128e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.413e-12
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)3.018e-11
Glyma.13G319700 hypothetical protein NA 1Chr13:41414504–41418957 (+)7.888e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.756e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.068e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.706e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.131e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.094e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.705e-13
Glyma.17G064100 hypothetical protein AT5G57490:VDAC4:voltage dependent anion channel 4 1Chr17:4930968–4937489 (-)7.762e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.705e-13
Glyma.18G050100 hypothetical protein NA 1Chr18:4323734–4329696 (+)1.6e-11
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)9.298e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.33e-11