Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P08245

Metabolite ID
P08245
Deionized mass
349.1354 Da
Average m/z
350.1415
Average RT
9.7251
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)5.279e-14
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)3.891e-13
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.532e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)8.074e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)8.075e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)7.121e-12
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)3.48e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)6.969e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.425e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.815e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.562e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.541e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.191e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.965e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.219e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.488e-11
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)2.753e-14
Glyma.07G129900 hypothetical protein AT2G06925:PLA2-ALPHA:Phospholipase A2 family protein 1Chr07:15420011–15421954 (-)8.247e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.344e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)8.37e-11
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)6.899e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.596e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.054e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.054e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.054e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.054e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)5.537e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)5.536e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)5.537e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)3.817e-16
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.817e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.817e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.153e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.153e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.153e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.153e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.384e-14
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.589e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.589e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.821e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.587e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.821e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.821e-14
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)4.834e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.342e-13
Glyma.18G202600 FAD7-1 omega-3 fatty acid desaturase NA 1Chr18:48365045–48368299 (-)1.562e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.316e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.316e-12
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)1.45e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.815e-14