Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P07593

Metabolite ID
P07593
Deionized mass
341.1064 Da
Average m/z
342.1155
Average RT
9.4894
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.474e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.603e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.881e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.881e-13
Glyma.17G215200 hypothetical protein NA 2Chr17:36125880–36142936 (+)9.267e-12
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 1Chr02:11280858–11285984 (+)1.75e-14
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.547e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.288e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.932e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.835e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.48e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.48e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.969e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.601e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.601e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.601e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.142e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.857e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.333e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)5.211e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)5.211e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)5.211e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.104e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)2.585e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.603e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.183e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.183e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.881e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.631e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.35e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.564e-12
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)9.834e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)2.686e-14
Glyma.17G212100 hypothetical protein NA 1Chr17:35010757–35014587 (+)9.267e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)9.267e-12
Glyma.17G213300 hypothetical protein NA 1Chr17:35589559–35592664 (+)9.267e-12
Glyma.17G213600 hypothetical protein AT4G32060:AT4G32060:calcium-binding EF hand family protein 1Chr17:35740625–35746554 (-)9.267e-12
Glyma.17G213700 hypothetical protein AT5G11090:AT5G11090:serine-rich protein-like protein 1Chr17:35767502–35768989 (-)9.267e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)9.268e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)9.267e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.474e-12