Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P07543

Metabolite ID
P07543
Deionized mass
289.0833 Da
Average m/z
290.0928
Average RT
9.4646
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)1.153e-14
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)5.282e-14
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)7.705e-15
Glyma.05G127500 hypothetical protein NA 2Chr05:32041345–32049554 (+)9.977e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 2Chr05:32125404–32138244 (+)2.481e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.301e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.533e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.481e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.481e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)3.696e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.369e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.035e-14
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)1.333e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.675e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.675e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.678e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)8.312e-12
Glyma.08G182500 hypothetical protein NA 1Chr08:14639429–14643788 (+)9.444e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)7.754e-11
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)1.523e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.469e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.478e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.478e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.478e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.478e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.148e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.493e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.493e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.866e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.866e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.866e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.866e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.422e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.067e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.301e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)8.427e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.016e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.294e-13
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)3.009e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.725e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.623e-14
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)5.826e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)5.826e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.22e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.023e-17
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)6.731e-11
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)5.209e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)5.209e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.674e-14
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)7.681e-16
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.001e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.001e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)7.705e-15
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)1.104e-12
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)6.805e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)4.462e-14
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.418e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.327e-13
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)4.372e-16