Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P07483

Metabolite ID
P07483
Deionized mass
239.0800 Da
Average m/z
240.0875
Average RT
9.4323
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.452e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.852e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.852e-13
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)5.433e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)5.433e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.462e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.612e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.133e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.087e-11
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)4.933e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.373e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)9.112e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.253e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.359e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.717e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.313e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.442e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.032e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.759e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.759e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.759e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)5.93e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.461e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)8.316e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)4.797e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.453e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.115e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.115e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.852e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)7.566e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)7.566e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.542e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.241e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.241e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.228e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.108e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.228e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.228e-14
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.326e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.289e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.061e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.106e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.785e-12
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)9.588e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)4.592e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)4.11e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.11e-12
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)3.727e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)5.393e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.516e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.516e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)7.511e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)4.001e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)4.506e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)5.992e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)3.532e-11