Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06972

Metabolite ID
P06972
Deionized mass
229.1296 Da
Average m/z
230.1362
Average RT
9.2407
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G161500 hypothetical protein NA 3Chr16:32076715–32092322 (-)1.79e-11
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)4.304e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)4.555e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)7.34e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.881e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.846e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.384e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.479e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)8.365e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.823e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)2.759e-11
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)4.304e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)4.691e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.161e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.17e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.649e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.867e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.574e-15
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)3.147e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.301e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.295e-11
Glyma.08G117700 hypothetical protein NA 1Chr08:9080318–9084658 (-)8.709e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)9.901e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.899e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.216e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)2.834e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.829e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.204e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)9.315e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.381e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)4.747e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.677e-14
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.272e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.335e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.272e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.272e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.334e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)5.124e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.082e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.691e-15
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.959e-13
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.071e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)9.617e-14
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)9.216e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.902e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.902e-13
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)9.597e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.067e-13
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)3.339e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)3.826e-11