Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06948

Metabolite ID
P06948
Deionized mass
169.0729 Da
Average m/z
170.0798
Average RT
9.2309
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.074e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.027e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.661e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.661e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.661e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)8.468e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.074e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)9.64e-12
Glyma.01G161200 hypothetical protein AT4G35750:AT4G35750:SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 1Chr01:49945683–49947759 (-)2.289e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.778e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.778e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)1.575e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.006e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)8.272e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.769e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.51e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.102e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.681e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.257e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.681e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.605e-12
Glyma.08G123400 hypothetical protein NA 1Chr08:9486565–9490448 (-)3.605e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.361e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.368e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.368e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.762e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.446e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)3.023e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.661e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.661e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.661e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)5.898e-13
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.661e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.661e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)4.67e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)7.494e-11
Glyma.13G183400 hypothetical protein NA 1Chr13:29666942–29670201 (+)5.916e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)4.511e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.9e-15
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)5.718e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)5.718e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.077e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.71e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.077e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.077e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)6.518e-11
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)1.118e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)1.797e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)5.795e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.987e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)1.887e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)2.407e-12
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)3.425e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)9.597e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.706e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.285e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.677e-12
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)3.559e-11