Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06891

Metabolite ID
P06891
Deionized mass
96.0572 Da
Average m/z
97.0644
Average RT
9.2135
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
128
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

128 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 6Chr19:3335896–3343744 (+)3.256e-17
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)6.824e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.194e-15
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)2.2e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.19e-15
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.488e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)7.38e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.332e-11
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)1.224e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.249e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.249e-14
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.068e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)7.237e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.256e-17
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)2.44e-11
Glyma.01G022800 hypothetical protein AT5G65490:AT5G65490:suppressor-like protein 1Chr01:2296901–2303966 (+)5.732e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)2.2e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)6.117e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.824e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.561e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.074e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.044e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)9.932e-14
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.31e-13
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)2.783e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)2.783e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)2.783e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.494e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.56e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.56e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.56e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.932e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)3.413e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)3.413e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)3.413e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)3.413e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.459e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.938e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.879e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.419e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.419e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.419e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.224e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.224e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.485e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.661e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.056e-12
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)1.691e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)8.078e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)8.078e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)5.279e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)5.279e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)8.078e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.658e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.332e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.332e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)7.38e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.332e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.128e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.582e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)3.164e-13
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)6.586e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.544e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.091e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)8.628e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.496e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)9.881e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)4.098e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.093e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.093e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.707e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.812e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.812e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.812e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.812e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.808e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.302e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.603e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.603e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.603e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.87e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.87e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.845e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.845e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.99e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.99e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.824e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.116e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.016e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.016e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.249e-14
Glyma.13G149700 hypothetical protein AT3G10040:AT3G10040:sequence-specific DNA binding transcription factor 1Chr13:26321941–26324172 (+)2.924e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)3.721e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.598e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.25e-16
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.25e-16
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.25e-16
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.307e-16
Glyma.13G204000 hypothetical protein AT3G12650:AT3G12650:uncharacterized protein 1Chr13:31799233–31800440 (+)7.066e-11
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)3.973e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)5.336e-17
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.185e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.045e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)6.904e-12
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)4.555e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)4.555e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)8.378e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.339e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.538e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.339e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.339e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.854e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.792e-15
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.229e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.274e-15
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.093e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)4.18e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)8.516e-11
Glyma.17G258200 GASA29 gibberellin-regulated protein 29 NA 1Chr17:41222782–41223797 (-)5.999e-12
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)1.542e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)1.904e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)8.843e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.879e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.879e-14
Glyma.19G026900 hypothetical protein NA 1Chr19:3331196–3333961 (-)9.659e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)6.392e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)7.75e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.603e-11