Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06665

Metabolite ID
P06665
Deionized mass
485.1348 Da
Average m/z
486.1443
Average RT
9.1335
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.847e-14
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)4.813e-12
Glyma.16G137600 hypothetical protein NA 2Chr16:29468438–29472890 (-)2.315e-13
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)2.809e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.039e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)5.591e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.062e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.062e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.316e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)2.362e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.35e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.28e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.28e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.28e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.471e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.254e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.536e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.331e-13
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)5.08e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)7.007e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.611e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.611e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.332e-11
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)4.038e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.296e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.847e-14
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)9.442e-11
Glyma.14G176600 hypothetical protein NA 1Chr14:43565478–43570243 (+)9.859e-11
Glyma.14G177100 hypothetical protein AT1G22450:COX6B:cytochrome C oxidase 6B 1Chr14:43661177–43665659 (+)3.065e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)5.825e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.553e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.085e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.553e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.553e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)1.759e-13
Glyma.16G137000 hypothetical protein NA 1Chr16:29418205–29421765 (-)5.194e-11
Glyma.16G137100 hypothetical protein NA 1Chr16:29421091–29421534 (+)5.194e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.249e-11
Glyma.16G140800 hypothetical protein AT3G50690:AT3G50690:Leucine-rich repeat (LRR) family protein 1Chr16:29854784–29858843 (-)5.504e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)7.787e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.111e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.199e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.111e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.039e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.941e-12
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)6.069e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)5.591e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)5.073e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.09e-12
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)6.038e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.119e-11