Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06657

Metabolite ID
P06657
Deionized mass
668.2094 Da
Average m/z
669.2171
Average RT
9.1300
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)4.965e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)7.224e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.108e-12
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 2Chr16:33322352–33330062 (+)1.487e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.242e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.242e-13
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)2.083e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.763e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)3.537e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.46e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.834e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.67e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.749e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.579e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.499e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.94e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.305e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.108e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.108e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.108e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.108e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.8e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.8e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.357e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.005e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.314e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)7.348e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.73e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.73e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)9.063e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.98e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.98e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.98e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.596e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.207e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.221e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.226e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)7.224e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.713e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.713e-12
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)8.782e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.545e-12