Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06653

Metabolite ID
P06653
Deionized mass
171.0874 Da
Average m/z
172.0951
Average RT
9.1283
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G147300 hypothetical protein NA 4Chr08:11238871–11242682 (+)8.493e-17
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.16e-11
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 2Chr08:11253074–11256505 (+)4.081e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.196e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.709e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)3.555e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)3.647e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)4.188e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)4.188e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)4.188e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)4.188e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)4.188e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)4.188e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)4.188e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.102e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.207e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.922e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.221e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.229e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.564e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.037e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.037e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)2.379e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.38e-11
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)1.826e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.16e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.16e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.16e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.16e-11
Glyma.08G146100 hypothetical protein NA 1Chr08:11119305–11124078 (+)9.674e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)3.644e-14
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)1.58e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)6.004e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)6.004e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.366e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.366e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.366e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.366e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.704e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.948e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.398e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.398e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.398e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.398e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.182e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.196e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.389e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.389e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.389e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.346e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.03e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.03e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)1.508e-11