Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06624

Metabolite ID
P06624
Deionized mass
327.5909 Da
Average m/z
328.5963
Average RT
9.1180
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G013800 hypothetical protein AT5G35790:G6PD1:glucose-6-phosphate dehydrogenase 1 3Chr07:1073133–1082652 (+)7.916e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)2.506e-13
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)9.803e-12
Glyma.07G010200 hypothetical protein NA 2Chr07:753451–763749 (-)3.152e-11
Glyma.20G218500 hypothetical protein AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… 2Chr20:45428471–45432099 (+)2.6e-14
Glyma.20G218700 hypothetical protein AT5G47520:RABA5a:RAB GTPase homolog A5A 2Chr20:45447355–45452750 (-)3.208e-13
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)7.552e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)6.762e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)6.762e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)6.762e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)1.801e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)4.378e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.078e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.506e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.626e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.56e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.56e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.56e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)6.739e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.04e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.291e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.423e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.291e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.291e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.423e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)1.541e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)1.952e-12
Glyma.07G006800 hypothetical protein NA 1Chr07:496217–497166 (+)4.45e-11
Glyma.07G006900 VLXC lipoxygenase NA 1Chr07:503752–509348 (+)4.45e-11
Glyma.07G007700 hypothetical protein AT1G72700:AT1G72700:ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein__AT1G54280:A… 1Chr07:563432–570287 (-)5.7e-11
Glyma.07G008300 hypothetical protein NA 1Chr07:604283–609562 (+)5.7e-11
Glyma.07G008700 hypothetical protein AT1G72880:AT1G72880:Survival protein SurE-like phosphatase/nucleotidase 1Chr07:637350–641408 (-)6.393e-12
Glyma.07G008800 cwinv AT3G13790:ATBFRUCT1:Glycosyl hydrolases family 32 protein 1Chr07:647865–652858 (-)6.393e-12
Glyma.07G009600 hypothetical protein AT3G13860:HSP60-3A:heat shock protein 60-3A 1Chr07:718009–725377 (-)1.497e-13
Glyma.07G010400 hypothetical protein AT3G13750:BGAL1:beta galactosidase 1 1Chr07:783384–789811 (-)7.916e-11
Glyma.07G010500 hypothetical protein AT1G55150:RH20:DEA(D/H)-box RNA helicase family protein 1Chr07:803172–810263 (+)3.152e-11
Glyma.07G010600 hypothetical protein NA 1Chr07:811039–816200 (+)3.152e-11
Glyma.07G010800 hypothetical protein NA 1Chr07:824697–827823 (-)3.152e-11
Glyma.07G010900 hypothetical protein AT1G55180:PLDEPSILON:phospholipase D alpha 4 1Chr07:830443–834361 (-)3.152e-11
Glyma.07G011000 hypothetical protein NA 1Chr07:838965–841202 (+)7.916e-11
Glyma.07G011100 hypothetical protein AT3G13700:AT3G13700:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr07:843406–847022 (+)3.152e-11
Glyma.07G011200 hypothetical protein AT5G49010:SLD5:DNA replication protein-like protein 1Chr07:847783–850968 (-)3.152e-11
Glyma.07G011500 hypothetical protein NA 1Chr07:879557–882132 (+)7.916e-11
Glyma.07G011600 hypothetical protein AT3G21250:ABCC8:multidrug resistance-associated protein 6 1Chr07:885910–891586 (+)3.152e-11
Glyma.07G012500 hypothetical protein AT1G51720:AT1G51720:Amino acid dehydrogenase family protein 1Chr07:977060–987360 (+)7.916e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.01e-14
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.01e-14
Glyma.07G013700 hypothetical protein AT4G29990:AT4G29990:Leucine-rich repeat transmembrane protein kinase protein 1Chr07:1063337–1068561 (-)7.916e-11
Glyma.07G014300 hypothetical protein NA 1Chr07:1115661–1120213 (-)2.884e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.749e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)4.812e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)4.812e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.7e-13
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)7.295e-12
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)1.342e-12
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)5.054e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)7.34e-11
Glyma.18G252000 hypothetical protein AT1G02100:SBI1:Leucine carboxyl methyltransferase 1Chr18:53874840–53885068 (-)8.764e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)1.821e-13
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)6.476e-11