Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06610

Metabolite ID
P06610
Deionized mass
290.1249 Da
Average m/z
291.1337
Average RT
9.1114
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.031e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.749e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.103e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)2.054e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.054e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.031e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.539e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.538e-12
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)3.398e-13
Glyma.01G176400 hypothetical protein AT1G63810:AT1G63810:nucleolar protein 1Chr01:51285599–51295173 (-)3.877e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.185e-14
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.838e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)5.856e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)5.856e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)5.856e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.056e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.188e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.188e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.188e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)2.885e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)2.601e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.601e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)2.601e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)2.601e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.203e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.053e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)9.584e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.054e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.054e-13
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.581e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.054e-13
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)8.26e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.765e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.765e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.658e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.658e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.658e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.658e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.103e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.103e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.388e-15
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.269e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.81e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)9.142e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.055e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.701e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.701e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)6.19e-13