Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06520

Metabolite ID
P06520
Deionized mass
340.1230 Da
Average m/z
341.1301
Average RT
9.0814
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
118
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

118 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G161500 hypothetical protein NA 4Chr16:32076715–32092322 (-)2.172e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.72e-12
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)1.019e-12
Glyma.14G149300 hypothetical protein NA 3Chr14:32235308–32258014 (+)3.807e-17
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)8.537e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.2e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.18e-18
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)5.369e-11
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)5.747e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.232e-12
Glyma.17G208400 hypothetical protein NA 2Chr17:34184145–34222159 (-)5.105e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)8.002e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.489e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.071e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.088e-13
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)5.464e-12
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)5.847e-13
Glyma.02G294200 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 1Chr02:47256480–47263517 (+)9.874e-15
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)1.279e-13
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)5.166e-15
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)5.166e-15
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)5.34e-15
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)5.34e-15
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)1.144e-12
Glyma.02G304500 hypothetical protein AT5G48300:ADG1:ADP glucose pyrophosphorylase 1 1Chr02:47950037–47954106 (+)4.226e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.336e-15
Glyma.03G027900 hypothetical protein AT2G45270:GCP1:glycoprotease 1 1Chr03:3048805–3061575 (-)6.34e-11
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)3.122e-14
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)3.122e-14
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)9.7e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)2.807e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)7.572e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.561e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.796e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.623e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.623e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.054e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.042e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.042e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.042e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.473e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.066e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.174e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.45e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.131e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)5.418e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.72e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.72e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.2e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.2e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.2e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.2e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.034e-16
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.034e-16
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.997e-21
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)1.019e-12
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)1.019e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.104e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.545e-11
Glyma.10G236000 hypothetical protein NA 1Chr10:46499079–46501955 (-)3.642e-12
Glyma.10G236100 hypothetical protein AT5G52280:AT5G52280:Myosin heavy chain-related protein 1Chr10:46503152–46510614 (-)3.642e-12
Glyma.10G236800 hypothetical protein NA 1Chr10:46559759–46563487 (+)3.642e-12
Glyma.10G237600 hypothetical protein NA 1Chr10:46607534–46609838 (+)5.884e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.454e-14
Glyma.10G238300 hypothetical protein AT5G07240:IQD24:IQ-domain 24 1Chr10:46688122–46693051 (-)4.792e-13
Glyma.10G238700 hypothetical protein NA 1Chr10:46721439–46725173 (+)4.792e-13
Glyma.10G239000 hypothetical protein NA 1Chr10:46755702–46757579 (-)4.792e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)6.744e-16
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.892e-19
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.111e-17
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.111e-17
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.111e-17
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.111e-17
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)7.434e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)8.637e-13
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)2.292e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)6.665e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.662e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.662e-11
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)1.896e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.715e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.715e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.747e-11
Glyma.13G163400 hypothetical protein AT5G20350:TIP1:Ankyrin repeat family protein with DHHC zinc finger domain-containing protein 1Chr13:27861309–27869162 (+)9.348e-13
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)7.27e-12
Glyma.13G199800 hypothetical protein NA 1Chr13:31353786–31356378 (+)9.159e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.941e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)5.686e-18
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)5.686e-18
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.062e-19
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)1.554e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.807e-17
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)9.475e-12
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)5.369e-11
Glyma.14G177100 hypothetical protein AT1G22450:COX6B:cytochrome C oxidase 6B 1Chr14:43661177–43665659 (+)3.77e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.232e-12
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)6.863e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.004e-18
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.077e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.8e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)7.503e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)8.537e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.906e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.906e-13
Glyma.17G207000 hypothetical protein NA 1Chr17:33925621–33935113 (+)5.105e-11
Glyma.17G208500 hypothetical protein NA 1Chr17:34224093–34230310 (-)5.105e-11
Glyma.17G209600 hypothetical protein AT2G25530:AT2G25530:AFG1-like ATPase family protein 1Chr17:34571688–34581787 (-)5.105e-11
Glyma.17G209700 hypothetical protein NA 1Chr17:34586468–34590309 (+)5.105e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.827e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)7.333e-12
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)9.516e-12
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)9.516e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)9.371e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.857e-16
Glyma.19G245800 hypothetical protein AT3G04690:ANX1:Malectin/receptor-like protein kinase family protein 1Chr19:49263978–49267290 (+)2.263e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)8.19e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.05e-11
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)5.757e-11