Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06074

Metabolite ID
P06074
Deionized mass
249.0955 Da
Average m/z
250.1025
Average RT
8.9007
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.106e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)4.095e-11
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 2Chr06:14104416–14111842 (+)2.846e-12
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)8.873e-12
Glyma.01G019000 hypothetical protein AT5G46800:BOU:Mitochondrial substrate carrier family protein 1Chr01:1818232–1821908 (-)3.987e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.993e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.607e-13
Glyma.03G148900 hypothetical protein NA 1Chr03:36449311–36451278 (+)4.758e-11
Glyma.03G149000 hypothetical protein AT2G48010:RKF3:receptor-like kinase in in flowers 3 1Chr03:36454104–36456822 (+)2.27e-11
Glyma.03G152800 hypothetical protein AT4G09820:TT8:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr03:36782245–36790298 (+)2.484e-11
Glyma.03G153200 hypothetical protein NA 1Chr03:36815745–36819041 (-)2.484e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.412e-14
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.115e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.088e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.269e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)4.935e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.363e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.917e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.551e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.136e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.949e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.275e-13
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)4.067e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)7.902e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)8.765e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.23e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.23e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.522e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.954e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.332e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.954e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.954e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.572e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.109e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.109e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)8.75e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)8.553e-11
Glyma.18G263200 hypothetical protein NA 1Chr18:54852891–54861158 (+)2.741e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.344e-12
Glyma.18G272000 hypothetical protein NA 1Chr18:55503155–55508039 (+)5.173e-11
Glyma.18G272100 hypothetical protein AT5G15630:IRX6:COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 1Chr18:55506268–55509726 (-)5.173e-11
Glyma.18G299700 hypothetical protein AT2G43180:AT2G43180:Phosphoenolpyruvate carboxylase family protein 1Chr18:57755837–57757150 (-)5.641e-11