Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06029

Metabolite ID
P06029
Deionized mass
105.0564 Da
Average m/z
106.0641
Average RT
8.8788
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
66
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

66 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)7.541e-13
Glyma.06G201700 hypothetical protein NA 2Chr06:18577883–18617874 (+)8.888e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.155e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 2Chr08:11525692–11536927 (+)1.553e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.372e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.372e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.982e-12
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 2Chr20:45490419–45496014 (+)6.765e-14
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)5.514e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)4.601e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.09e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)1.184e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.321e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)5.016e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.469e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.335e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.117e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.723e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.277e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.64e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.64e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.64e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.021e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.552e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.967e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)3.049e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.244e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.655e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)2.655e-12
Glyma.08G136700 hypothetical protein NA 1Chr08:10457207–10460163 (-)1.952e-11
Glyma.08G150000 hypothetical protein AT2G32850:AT2G32850:Protein kinase superfamily protein 1Chr08:11518864–11523442 (-)8.448e-11
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)5.708e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)5.708e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)2.674e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.226e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)3.769e-14
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.082e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.739e-11
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)4.78e-11
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 1Chr13:24601574–24606756 (-)9.965e-11
Glyma.13G133900 hypothetical protein NA 1Chr13:24613843–24616128 (+)9.965e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)9.965e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.354e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.354e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.372e-14
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)3.467e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.064e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.064e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.064e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.684e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)9.004e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)8.496e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.841e-12
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)3.096e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.699e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.104e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.599e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.405e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)4.44e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.108e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)2.206e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)5.695e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)1.061e-13
Glyma.20G218100 hypothetical protein AT1G32900:GBSS1:UDP-Glycosyltransferase superfamily protein 1Chr20:45387265–45391879 (-)6.752e-12
Glyma.20G220900 GER12 germin-like protein AT5G39110:AT5G39110:RmlC-like cupins superfamily protein__AT5G39160:AT5G39160:RmlC-like cupins superfamily protein__AT5… 1Chr20:45587617–45588678 (+)4.357e-11
Glyma.20G221200 hypothetical protein NA 1Chr20:45616970–45619607 (-)4.357e-11