Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P06008

Metabolite ID
P06008
Deionized mass
438.1271 Da
Average m/z
439.1369
Average RT
8.8724
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
39
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

39 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.231e-12
Glyma.06G205100 hypothetical protein NA 2Chr06:19392099–19394901 (+)8.646e-11
Glyma.06G206000 hypothetical protein AT5G08110:AT5G08110:UBQ, helicase-c and DEAD-like helicase domain-containing protein 2Chr06:19693187–19711341 (-)6.646e-13
Glyma.06G207100 hypothetical protein AT1G73990:SPPA:signal peptide peptidase 2Chr06:19963095–19969940 (-)3.416e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)6.07e-15
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.161e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.161e-14
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)4.219e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)4.219e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)3.586e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.812e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.812e-11
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)7.548e-11
Glyma.06G204600 hypothetical protein NA 1Chr06:19307068–19316071 (-)4.495e-12
Glyma.06G204800 hypothetical protein AT1G18610:AT1G18610:Galactose oxidase/kelch repeat superfamily protein 1Chr06:19324767–19334540 (-)1.81e-11
Glyma.06G204900 hypothetical protein AT1G74120:AT1G74120:Mitochondrial transcription termination factor family protein 1Chr06:19353866–19354929 (+)1.809e-11
Glyma.06G205000 hypothetical protein AT5G60940:AT5G60940:Transducin/WD40 repeat-like superfamily protein 1Chr06:19370642–19375687 (-)8.646e-11
Glyma.06G205800 AP1A agamous-like MADS-box AT5G60910:AGL8:AGAMOUS-like 8 1Chr06:19583729–19590906 (+)6.646e-13
Glyma.07G007100 hypothetical protein NA 1Chr07:529398–533680 (+)3.959e-11
Glyma.07G007400 hypothetical protein AT1G54270:EIF4A-2:eif4a-2__AT3G13920:EIF4A1:eukaryotic translation initiation factor 4A1__AT1G72730:AT1G72730:DEA(D/H)-… 1Chr07:549904–553210 (+)3.959e-11
Glyma.07G014300 hypothetical protein NA 1Chr07:1115661–1120213 (-)5.934e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)9.814e-19
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)9.814e-19
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.474e-13
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)5.446e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.654e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.595e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.595e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.068e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.231e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.293e-11
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)7.98e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.317e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.317e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.161e-14
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.179e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)4.282e-11
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)8.936e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)1.389e-11