Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05988

Metabolite ID
P05988
Deionized mass
526.2130 Da
Average m/z
527.2237
Average RT
8.8683
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)3.605e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)2.373e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)6.097e-12
Glyma.20G218500 hypothetical protein AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… 2Chr20:45428471–45432099 (+)6.844e-15
Glyma.20G218700 hypothetical protein AT5G47520:RABA5a:RAB GTPase homolog A5A 2Chr20:45447355–45452750 (-)4.144e-14
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)1.789e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)8.504e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.526e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.419e-12
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)8.542e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)8.542e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)8.542e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)8.542e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)8.542e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)8.542e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)8.542e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)8.542e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)8.542e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)8.542e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.845e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.845e-12
Glyma.07G014300 hypothetical protein NA 1Chr07:1115661–1120213 (-)4.597e-13
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)3.867e-15
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)3.867e-15
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)3.508e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.217e-12
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)5.329e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.865e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.502e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.385e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.385e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.173e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.613e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.613e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.613e-11
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)2.755e-11
Glyma.15G037400 hypothetical protein AT5G59420:ORP3C:OSBP(oxysterol binding protein)-related protein 3C 1Chr15:2950291–2955686 (-)4.306e-11
Glyma.15G037600 hypothetical protein AT2G29050:RBL1:RHOMBOID-like 1 1Chr15:2964304–2967785 (+)2.642e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)4.583e-12
Glyma.20G217600 hypothetical protein NA 1Chr20:45339886–45344226 (+)2.936e-11
Glyma.20G217800 hypothetical protein AT1G32850:UBP11:ubiquitin-specific protease 11__AT4G10590:UBP10:ubiquitin-specific protease 10 1Chr20:45369972–45380130 (+)2.936e-11