Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05897

Metabolite ID
P05897
Deionized mass
272.1453 Da
Average m/z
273.1517
Average RT
8.8495
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.792e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.951e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)7.702e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)6.673e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.755e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.755e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)7.534e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.791e-15
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.216e-12
Glyma.04G044600 hypothetical protein NA 1Chr04:3556928–3559705 (-)8.361e-14
Glyma.04G044800 LBD16 LBD domain-containing transcription factor NA 1Chr04:3582233–3583098 (-)2.254e-12
Glyma.04G191400 hypothetical protein AT3G48380:AT3G48380:Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 1Chr04:46220242–46235879 (+)8.206e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.257e-11
Glyma.05G154000 hypothetical protein NA 1Chr05:34732843–34735376 (-)1.601e-11
Glyma.05G169100 hypothetical protein NA 1Chr05:35959241–35961911 (+)6.993e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.126e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.321e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.185e-13
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)4.327e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.811e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.003e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.293e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.234e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.234e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.234e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.234e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.018e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.332e-13
Glyma.11G109100 hypothetical protein NA 1Chr11:8322727–8324868 (-)2.735e-11
Glyma.11G109900 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr11:8378708–8386493 (-)8.417e-12
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)3.569e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.951e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)2.277e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)5.635e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.136e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.744e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.136e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.136e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.884e-14
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)4.158e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.967e-13
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)6.808e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.849e-12
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)9.781e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.245e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)8.221e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.173e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)7.702e-13
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)3.791e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)5.728e-11