Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05790

Metabolite ID
P05790
Deionized mass
384.9855 Da
Average m/z
385.9933
Average RT
8.8302
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
88
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

88 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G124800 hypothetical protein NA 7Chr04:16368438–16390781 (+)1.042e-11
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 3Chr03:4472672–4477787 (-)1.851e-12
Glyma.19G118900 hypothetical protein NA 3Chr19:37651114–37657346 (+)1.373e-11
Glyma.03G035500 hypothetical protein NA 2Chr03:4289118–4294184 (+)7.398e-15
Glyma.03G035800 hypothetical protein NA 2Chr03:4317466–4321009 (+)2.609e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)5.22e-12
Glyma.04G107400 hypothetical protein AT2G20510:TIM44-1:translocase inner membrane subunit 44-1__AT2G36070:TIM44-2:translocase inner membrane subunit 44-2 2Chr04:11276495–11288391 (+)9.204e-13
Glyma.04G117400 hypothetical protein AT5G51540:AT5G51540:Zincin-like metalloproteases family protein 2Chr04:13774897–13822716 (-)2.381e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.939e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.939e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)3.746e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.054e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.908e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.908e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.412e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.07e-13
Glyma.03G033300 hypothetical protein NA 1Chr03:3852388–3859850 (-)8.882e-11
Glyma.03G033400 hypothetical protein NA 1Chr03:3856388–3859835 (-)8.882e-11
Glyma.03G033600 hypothetical protein AT3G60580:AT3G60580:C2H2-like zinc finger protein 1Chr03:3885839–3887777 (-)3.018e-12
Glyma.03G033800 EXPB3 AT1G65680:EXPB2:expansin B2 1Chr03:3927353–3930165 (-)7.4e-11
Glyma.03G035300 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr03:4274744–4278897 (-)7.775e-11
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)1.518e-14
Glyma.03G036200 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 1Chr03:4360966–4367363 (-)5.592e-11
Glyma.03G036600 hypothetical protein NA 1Chr03:4432910–4435002 (-)5.63e-14
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)4.895e-11
Glyma.04G083000 hypothetical protein AT4G32780:AT4G32780:phosphoinositide binding protein 1Chr04:7002219–7006087 (+)9.582e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.641e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.789e-11
Glyma.04G103500 hypothetical protein AT1G78110:AT1G78110:nucleolar GTP-binding protein 1Chr04:9624916–9626694 (-)1.278e-11
Glyma.04G103800 hypothetical protein NA 1Chr04:9705282–9705434 (+)6.154e-11
Glyma.04G107100 hypothetical protein AT1G22060:AT1G22060:sporulation-specific protein 1Chr04:11239281–11250948 (-)9.204e-13
Glyma.04G107300 hypothetical protein AT1G36310:AT1G36310:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:11253648–11256731 (+)9.204e-13
Glyma.04G110600 hypothetical protein NA 1Chr04:12199550–12200299 (-)9.204e-13
Glyma.04G110700 hypothetical protein AT1G72190:AT1G72190:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr04:12206027–12222024 (-)9.204e-13
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.704e-12
Glyma.04G124600 hypothetical protein NA 1Chr04:16329983–16332898 (-)4.303e-11
Glyma.04G125100 hypothetical protein NA 1Chr04:16472994–16473578 (-)2.362e-11
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)3.058e-13
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)3.058e-13
Glyma.04G191400 hypothetical protein AT3G48380:AT3G48380:Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 1Chr04:46220242–46235879 (+)1.616e-13
Glyma.05G103700 hypothetical protein NA 1Chr05:27632520–27637991 (+)7.501e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.159e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.163e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.163e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.163e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.785e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.389e-16
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.5e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.066e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)3.178e-13
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)2.163e-11
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)6.037e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)6.037e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)6.133e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.263e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.263e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.413e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.413e-14
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 1Chr12:35784957–35801339 (+)7.784e-11
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 1Chr12:35879106–35881779 (+)4.525e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.276e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.276e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.562e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.207e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.577e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.577e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.91e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.91e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.939e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.46e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.014e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.324e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.367e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.934e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.191e-11
Glyma.16G173000 hypothetical protein NA 1Chr16:33365497–33367017 (+)6.565e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.137e-15
Glyma.16G180200 hypothetical protein NA 1Chr16:34077613–34081734 (+)2.655e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)8.152e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.054e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)4.985e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)2.136e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)5.557e-12
Glyma.19G119000 hypothetical protein AT5G17770:CBR:NADH:cytochrome B5 reductase 1 1Chr19:37661894–37666622 (+)3.856e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.07e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.348e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)9.372e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.476e-11