Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05720

Metabolite ID
P05720
Deionized mass
482.1159 Da
Average m/z
483.1232
Average RT
8.8135
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
88
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

88 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G090600 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 4Chr18:8991445–9001857 (-)9.539e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.734e-19
Glyma.03G021000 hypothetical protein NA 2Chr03:2148298–2162954 (-)2.814e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)1.825e-11
Glyma.04G129500 hypothetical protein AT3G21060:RBL:Transducin/WD40 repeat-like superfamily protein 2Chr04:18096368–18109438 (+)7.992e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.247e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.826e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.069e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.069e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.263e-12
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)9.624e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.256e-12
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)1.224e-12
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)1.224e-12
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)1.224e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.361e-13
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)8.347e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)8.919e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)1.758e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)1.774e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)5.839e-11
Glyma.03G020900 hypothetical protein AT3G18030:HAL3A:HAL3-like protein A 1Chr03:2143987–2147131 (-)2.814e-11
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)6.819e-11
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)3.702e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)9.476e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.108e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.247e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)5.4e-11
Glyma.04G129600 hypothetical protein NA 1Chr04:18110585–18112762 (+)7.992e-11
Glyma.04G188900 hypothetical protein NA 1Chr04:45982982–45986148 (+)9.262e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.688e-16
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.102e-14
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)9.029e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.504e-16
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.304e-16
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.304e-16
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.527e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.277e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.277e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.277e-14
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)5.719e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)4.492e-13
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)2.86e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.539e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.969e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.9e-17
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.56e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.677e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.677e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.189e-11
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)9.602e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)4.147e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.104e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.104e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.104e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.699e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)9.203e-13
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)9.203e-13
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)5.554e-14
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)5.554e-14
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.36e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.212e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.002e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.002e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.826e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.402e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.402e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.069e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.367e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.263e-12
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)9.624e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.256e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)2.708e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)2.708e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.687e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.258e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.687e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.687e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.425e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.17e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.16e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.956e-11
Glyma.18G090700 hypothetical protein NA 1Chr18:9016075–9018183 (+)9.539e-11
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)2.446e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.6e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.6e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.302e-14
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)4.469e-11