Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05708

Metabolite ID
P05708
Deionized mass
230.0374 Da
Average m/z
231.0441
Average RT
8.8104
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.066e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)3.378e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.779e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.232e-13
Glyma.16G072000 hypothetical protein AT1G52800:AT1G52800:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 2Chr16:7255773–7261809 (+)2.47e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)1.337e-12
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)1.337e-12
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)1.337e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.637e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)8.581e-11
Glyma.05G164800 hypothetical protein NA 1Chr05:35549831–35557199 (-)4.755e-11
Glyma.05G165200 hypothetical protein NA 1Chr05:35586701–35592272 (+)1.079e-11
Glyma.05G165600 hypothetical protein NA 1Chr05:35616883–35621136 (-)7.928e-12
Glyma.05G166000 hypothetical protein NA 1Chr05:35657133–35657621 (-)2.587e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.877e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.443e-12
Glyma.06G285200 hypothetical protein AT2G31060:EMB2785:elongation factor family protein 1Chr06:47380397–47390651 (+)9.534e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.692e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.72e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.692e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.692e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.72e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.372e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.372e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)1.488e-12
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)5.998e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)8.388e-14
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.474e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)4.677e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)4.677e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)4.677e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)4.677e-12
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)9.538e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)7.711e-13
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)2.507e-12
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)2.531e-11
Glyma.12G098200 hypothetical protein AT2G32480:ARASP:chloroplastic membrane metallo proteases__AT1G05140:AT1G05140:Peptidase M50 family protein 1Chr12:8452063–8456493 (+)5.548e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.329e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.329e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.066e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.595e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.766e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.269e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.779e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.232e-13
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)2.204e-12
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)2.204e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.792e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.011e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)1.241e-12
Glyma.16G028700 hypothetical protein AT3G25530:GLYR1:glyoxylate reductase 1 1Chr16:2755872–2761924 (+)2.694e-11
Glyma.16G028900 hypothetical protein AT2G44040:AT2G44040:Dihydrodipicolinate reductase, bacterial/plant__AT3G59890:AT3G59890:Dihydrodipicolinate reductase, … 1Chr16:2766779–2770348 (+)2.694e-11
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)5.841e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.776e-11
Glyma.18G294900 hypothetical protein NA 1Chr18:57235496–57236456 (+)6.181e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)2.102e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.517e-14
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.558e-11