Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05577

Metabolite ID
P05577
Deionized mass
212.0693 Da
Average m/z
213.0760
Average RT
8.7746
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)8.117e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.38e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)4.22e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.261e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.261e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.261e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.492e-13
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)8.609e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)5.389e-11
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)4.607e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.484e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.908e-13
Glyma.03G035800 hypothetical protein NA 1Chr03:4317466–4321009 (+)4.174e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.547e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.356e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.001e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.001e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.001e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.937e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.985e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.985e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.38e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.38e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)6.507e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.261e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.261e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.261e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)8.528e-13
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.261e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.261e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)9.709e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.409e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.322e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.322e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.322e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.606e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.786e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.786e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.826e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.826e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.826e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.826e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.639e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)7.415e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)9.935e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)9.935e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.724e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.121e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.724e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.724e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.453e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.608e-17
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)9.679e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)5.924e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.677e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.065e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.865e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.423e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.723e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)3.642e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)3.642e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)7.648e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)9.365e-11
Glyma.17G251300 hypothetical protein AT1G19520:NFD5:pentatricopeptide (PPR) repeat-containing protein 1Chr17:40609523–40612369 (+)6.799e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)1.121e-13
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)1.121e-13
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)7.091e-13
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)4.002e-11
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)4.002e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.492e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)2.173e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.492e-13
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)6.35e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.007e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.347e-11