Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05141

Metabolite ID
P05141
Deionized mass
394.1195 Da
Average m/z
395.1294
Average RT
8.6183
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G161500 hypothetical protein NA 3Chr16:32076715–32092322 (-)1.638e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)3.251e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.315e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.01e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.01e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.011e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.011e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.188e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.588e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)1.578e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.164e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.403e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.798e-14
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)3.107e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.315e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.315e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.315e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.315e-11
Glyma.08G207300 hypothetical protein NA 1Chr08:16745344–16755320 (+)1.434e-11
Glyma.08G207400 hypothetical protein AT1G80000:AT1G80000:CASC3/Barentsz eIF4AIII binding protein 1Chr08:16756340–16761352 (+)1.434e-11
Glyma.08G207500 hypothetical protein NA 1Chr08:16760797–16761352 (+)1.434e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)8.948e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.58e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.58e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.58e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.555e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.555e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.757e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.757e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.73e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.623e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.623e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.01e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.01e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.414e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)6.929e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)7.888e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.59e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.302e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.302e-11
Glyma.15G009700 hypothetical protein NA 1Chr15:751766–753795 (+)6.922e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)5.501e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.463e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.033e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.463e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.463e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.413e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.185e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)8.804e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.488e-13
Glyma.16G159100 hypothetical protein NA 1Chr16:31889835–31894662 (+)9.929e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)9.465e-12
Glyma.18G045500 hypothetical protein NA 1Chr18:3942686–3943765 (-)5.415e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.424e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.424e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)2.227e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)2.227e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)2.227e-11