Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05080

Metabolite ID
P05080
Deionized mass
561.1862 Da
Average m/z
562.1961
Average RT
8.5855
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G137600 hypothetical protein NA 3Chr16:29468438–29472890 (-)4.591e-14
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)5.334e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.699e-11
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)1.799e-11
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)3.636e-12
Glyma.16G137000 hypothetical protein NA 2Chr16:29418205–29421765 (-)1.221e-12
Glyma.16G137100 hypothetical protein NA 2Chr16:29421091–29421534 (+)1.221e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)8.077e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.091e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.257e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)6.058e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.678e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.288e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.563e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)5.233e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.388e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.221e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)5.246e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)8.956e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.629e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.207e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.699e-11
Glyma.14G177500 hypothetical protein AT3G13620:PUT4:Amino acid permease family protein 1Chr14:43740577–43742476 (-)7.931e-11
Glyma.14G178600 hypothetical protein NA 1Chr14:43963455–43970275 (+)1.338e-12
Glyma.14G178700 hypothetical protein NA 1Chr14:43978407–43980052 (+)1.338e-12
Glyma.14G178800 hypothetical protein AT1G28210:ATJ1:DNAJ heat shock family protein 1Chr14:43987725–44003499 (-)1.338e-12
Glyma.14G179000 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr14:44030814–44034325 (+)1.448e-13
Glyma.14G179200 hypothetical protein AT4G24380:AT4G24380:dihydrofolate reductase 1Chr14:44060802–44063722 (+)1.448e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.812e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.587e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.813e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.813e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)6.382e-16
Glyma.16G138000 hypothetical protein AT4G36530:AT4G36530:alpha/beta-Hydrolases superfamily protein 1Chr16:29508469–29514252 (-)4.296e-13
Glyma.16G139400 hypothetical protein AT3G50870:MNP:GATA type zinc finger transcription factor family protein 1Chr16:29672011–29674023 (+)8.676e-11
Glyma.16G140800 hypothetical protein AT3G50690:AT3G50690:Leucine-rich repeat (LRR) family protein 1Chr16:29854784–29858843 (-)2.433e-11
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 1Chr16:30388030–30390647 (-)1.507e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.118e-13
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)7.301e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.421e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.421e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.077e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.197e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)4.79e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)3.909e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.091e-12
Glyma.18G194900 hypothetical protein NA 1Chr18:46855096–46855729 (+)2.549e-11
Glyma.18G197500 hypothetical protein NA 1Chr18:47377826–47380850 (+)7.323e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.225e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)8.652e-13
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)6.406e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)7.556e-12