Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P05028

Metabolite ID
P05028
Deionized mass
573.1149 Da
Average m/z
574.1240
Average RT
8.5440
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
94
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

94 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 12Chr20:34757381–34771672 (+)2.667e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)4.12e-12
Glyma.14G149300 hypothetical protein NA 3Chr14:32235308–32258014 (+)4.15e-13
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.483e-12
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)7.899e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)6.371e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.232e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.409e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)6.792e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)3.562e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.678e-14
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.051e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)9.778e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.54e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.54e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.441e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.986e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.18e-12
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)3.089e-11
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)3.543e-12
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)3.543e-12
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)1.062e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)9.534e-13
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.237e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.486e-11
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)6.243e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.237e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.496e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.496e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.496e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.442e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.583e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.058e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)7.962e-12
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)7.962e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.228e-13
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.709e-13
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)2.165e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)2.165e-11
Glyma.06G261500 hypothetical protein NA 1Chr06:44829183–44833460 (-)1.219e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)3.009e-14
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)3.009e-14
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)6.698e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.232e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.232e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.232e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.232e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.449e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.63e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.274e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.434e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)8.83e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.221e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.221e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.221e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.221e-12
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)3.835e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.307e-12
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)2.808e-12
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)2.808e-12
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)2.808e-12
Glyma.12G002400 hypothetical protein AT5G47850:CCR4:CRINKLY4 related 4 1Chr12:197288–200229 (+)9.75e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.036e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)9.165e-12
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)8.779e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)7.559e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)7.559e-11
Glyma.14G135100 hypothetical protein AT4G31540:EXO70G1:exocyst subunit exo70 family protein G1 1Chr14:23623422–23626499 (-)1.732e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.15e-13
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)3.5e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.792e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.972e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.124e-12
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)4.283e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.748e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.917e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.43e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.492e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.492e-13
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)3.567e-11
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)3.271e-12
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)2.841e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.25e-13
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.483e-12
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)4.659e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.541e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)5.438e-11
Glyma.20G104000 hypothetical protein AT1G50320:THX:thioredoxin X 1Chr20:34652199–34663249 (-)7.524e-11
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)2.667e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)2.978e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)7.349e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)5.429e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.187e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.658e-12