Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04961

Metabolite ID
P04961
Deionized mass
395.1082 Da
Average m/z
396.1146
Average RT
8.4911
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.081e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.311e-13
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)6.302e-17
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.081e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.833e-12
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)6.075e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)6.074e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.49e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)4.544e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.018e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.416e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.312e-15
Glyma.06G145300 hypothetical protein AT5G05340:PRX52:Peroxidase superfamily protein 1Chr06:11849535–11851671 (+)7.367e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.748e-11
Glyma.06G307900 hypothetical protein NA 1Chr06:49664901–49674729 (+)6.788e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.382e-16
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.568e-15
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)7.338e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)3.678e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)2.909e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)5.624e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.624e-11
Glyma.15G012000 hypothetical protein NA 1Chr15:936268–944374 (+)5.621e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.047e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.13e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.046e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.047e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.31e-14
Glyma.16G002800 hypothetical protein AT4G24290:AT4G24290:MAC/Perforin domain-containing protein 1Chr16:144387–154780 (+)4.574e-11
Glyma.16G003100 hypothetical protein AT1G09800:AT1G09800:Pseudouridine synthase family protein 1Chr16:169457–172345 (-)4.574e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)7.517e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.861e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.69e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.703e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)9.48e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.697e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.682e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)5.631e-11
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)4.312e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)6.751e-14
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.341e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.709e-14