Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04948

Metabolite ID
P04948
Deionized mass
435.1205 Da
Average m/z
436.1260
Average RT
8.4855
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.153e-12
Glyma.08G237500 AT1G79560 protein AT1G79560:FTSH12:FTSH protease 12 3Chr08:20191321–20257603 (-)6.678e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.336e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.804e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.611e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.611e-13
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)1.033e-12
Glyma.16G161500 hypothetical protein NA 2Chr16:32076715–32092322 (-)8.437e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.153e-12
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)1.446e-11
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr02:5645621–5648965 (+)9.023e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.488e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.429e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.135e-15
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)8.015e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.51e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.976e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.427e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.196e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.579e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.606e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.487e-11
Glyma.06G322000 hypothetical protein AT5G56170:LLG1:LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 1Chr06:51042976–51045446 (-)2.306e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)3.901e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)3.901e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.951e-11
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)4.691e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.225e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.263e-11
Glyma.08G236300 hypothetical protein NA 1Chr08:19980951–19982026 (-)6.678e-11
Glyma.08G236400 hypothetical protein AT1G56050:AT1G56050:GTP-binding protein-like protein 1Chr08:20009675–20029987 (-)6.678e-11
Glyma.08G236700 hypothetical protein AT1G79090:AT1G79090:topoisomerase II-associated protein 1Chr08:20051144–20053515 (+)6.678e-11
Glyma.08G236800 Conserved telomere maintenance component 1 AT4G09680:CTC1:conserved telomere maintenance component 1 1Chr08:20067579–20081988 (-)6.678e-11
Glyma.08G237200 hypothetical protein AT1G79570:AT1G79570:kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein 1Chr08:20140030–20147276 (+)6.678e-11
Glyma.08G237800 hypothetical protein NA 1Chr08:20272407–20273172 (-)6.678e-11
Glyma.08G238100 hypothetical protein NA 1Chr08:20294013–20296401 (-)6.678e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.765e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.244e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.643e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.643e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.643e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.686e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.686e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.939e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.647e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.054e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.054e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.764e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)3.569e-11
Glyma.13G044300 hypothetical protein NA 1Chr13:13774555–13779250 (-)1.304e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)2.331e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.223e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.336e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.611e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.611e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.676e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)6.514e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.35e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.847e-14
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)5.536e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.536e-12
Glyma.15G009700 hypothetical protein NA 1Chr15:751766–753795 (+)3.661e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)9.772e-15
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.962e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.962e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.962e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.43e-14
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.344e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)9.304e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.515e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.977e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.99e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.553e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.54e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)1.045e-12