Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04910

Metabolite ID
P04910
Deionized mass
398.1209 Da
Average m/z
399.1242
Average RT
8.4542
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)2.969e-13
Glyma.07G095000 hypothetical protein NA 3Chr07:8843665–8855430 (+)1.189e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.086e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)2.779e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)4.201e-12
Glyma.07G095400 hypothetical protein NA 2Chr07:8914725–8920132 (+)1.002e-11
Glyma.07G095800 hypothetical protein NA 2Chr07:8969502–8976133 (+)1.002e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)9.821e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.154e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.17e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)6.42e-14
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)4.324e-13
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)1.172e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)1.172e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)1.172e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)1.172e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)1.172e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)1.172e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)1.172e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)2.779e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.189e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.937e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.182e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.543e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.544e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.284e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.973e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.973e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.973e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.284e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.401e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.781e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.01e-33
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.536e-13
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)3.903e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.328e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)5.53e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)5.211e-11
Glyma.07G093800 hypothetical protein NA 1Chr07:8755633–8760962 (+)4.163e-13
Glyma.07G094200 hypothetical protein NA 1Chr07:8792240–8797837 (+)2.65e-13
Glyma.07G095500 hypothetical protein NA 1Chr07:8934807–8940626 (+)1.002e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)8.426e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)1.655e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.959e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.959e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.708e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.708e-13
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)4.682e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.882e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.458e-11
Glyma.16G063000 hypothetical protein AT1G60170:emb1220:pre-mRNA processing ribonucleoprotein binding region-containing protein 1Chr16:6182396–6189113 (+)6.045e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.275e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.812e-14
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)2.006e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)2.006e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.742e-12
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)6.994e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.086e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.073e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.073e-14
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)4.182e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.534e-14
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)4.943e-13
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)1.489e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)8.856e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)8.177e-13
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)3.456e-15