Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04897

Metabolite ID
P04897
Deionized mass
291.1291 Da
Average m/z
292.1358
Average RT
8.4448
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.702e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.135e-12
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)1.191e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)8.119e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.613e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.613e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)8.681e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)8.681e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.515e-14
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.651e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)5.66e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.496e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.1e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)5.939e-11
Glyma.06G037800 hypothetical protein NA 1Chr06:2894530–2896325 (-)2.557e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.696e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.316e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.316e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)5.443e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.702e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.702e-12
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)9.786e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)9.786e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)8.691e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)7.669e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)8.691e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.536e-11
Glyma.09G099500 hypothetical protein AT1G16310:AT1G16310:Cation efflux family protein 1Chr09:18099034–18105167 (+)5.4e-12
Glyma.09G099600 hypothetical protein NA 1Chr09:18100113–18100745 (+)5.4e-12
Glyma.09G099800 hypothetical protein NA 1Chr09:18134075–18134470 (-)5.4e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.179e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.179e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.106e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.459e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)3.819e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)3.819e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.905e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.883e-14
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.476e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.91e-11
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)3.119e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)3.227e-14
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.206e-14
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)2.114e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.206e-14
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.982e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)6.321e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)3.51e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)5.091e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)5.091e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)2.36e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)8.708e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.729e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.729e-14