Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04891

Metabolite ID
P04891
Deionized mass
248.0775 Da
Average m/z
249.0845
Average RT
8.4404
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 7Chr03:2202325–2234931 (+)2.753e-12
Glyma.03G021000 hypothetical protein NA 4Chr03:2148298–2162954 (-)8.337e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 3Chr03:2240686–2246512 (-)1.037e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)3.771e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)6.775e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)7.795e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.36e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)8.713e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.258e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.258e-13
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 2Chr14:47664851–47670630 (+)2.511e-12
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)3.941e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)7.015e-12
Glyma.03G021100 hypothetical protein AT1G12650:AT1G12650:rRNA biosis RRP36-like protein 1Chr03:2162406–2167712 (+)1.168e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.127e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.428e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.157e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.512e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.037e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.027e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.803e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)7.897e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.291e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.352e-11
Glyma.07G062300 hypothetical protein AT2G46220:AT2G46220:DUF2358 family protein (DUF2358) 1Chr07:5518907–5522005 (+)4.717e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)9.804e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)1.093e-11
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)3.61e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.36e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.36e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.36e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.36e-11
Glyma.08G211100 GLYI-9 putative lactoylglutathione lyase AT1G80160:GLYI7:Lactoylglutathione lyase / glyoxalase I family protein 1Chr08:17046316–17048640 (-)5.179e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.558e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.508e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)6.451e-13
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)6.451e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.713e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.029e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.029e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.258e-13
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.827e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.703e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.833e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.312e-11
Glyma.14G211900 hypothetical protein AT5G16560:KAN:Homeodomain-like superfamily protein 1Chr14:47690466–47697203 (+)2.944e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)2.176e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.425e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)7.665e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.625e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.625e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)3.771e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)8.061e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)2.492e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.637e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.637e-13