Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04873

Metabolite ID
P04873
Deionized mass
185.0676 Da
Average m/z
186.0746
Average RT
8.4254
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
24
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

24 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 3Chr03:5113019–5121557 (+)1.839e-12
Glyma.09G069800 hypothetical protein AT3G45310:AT3G45310:Cysteine proteinases superfamily protein 3Chr09:7089916–7094633 (-)1.16e-11
Glyma.19G077800 hypothetical protein AT4G30920:LAP2:Cytosol aminopeptidase family protein 3Chr19:27978244–27993436 (+)1.133e-11
Glyma.19G078100 hypothetical protein NA 3Chr19:28032426–28037994 (-)1.133e-11
Glyma.03G040900 hypothetical protein AT3G11740:AT3G11740:LURP-one-like protein (DUF567) 2Chr03:5164999–5166689 (-)1.839e-12
Glyma.03G041800 hypothetical protein NA 2Chr03:5307518–5311842 (+)1.839e-12
Glyma.03G047200 hypothetical protein NA 2Chr03:5993387–5998875 (+)1.839e-12
Glyma.05G200000 SSH2 NA 2Chr05:38367937–38377939 (+)7.47e-12
Glyma.03G040800 hypothetical protein AT3G23270:AT3G23270:Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein 1Chr03:5149644–5155590 (+)2.202e-11
Glyma.03G041600 hypothetical protein AT2G38440:SCAR2:SCAR homolog 2 1Chr03:5283969–5291986 (+)2.202e-11
Glyma.03G041900 hypothetical protein NA 1Chr03:5313339–5315847 (-)2.202e-11
Glyma.03G042300 hypothetical protein NA 1Chr03:5350737–5353536 (-)2.202e-11
Glyma.03G045700 hypothetical protein NA 1Chr03:5815273–5822250 (-)1.839e-12
Glyma.03G046000 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein 1Chr03:5848597–5849782 (-)1.839e-12
Glyma.03G046200 hypothetical protein NA 1Chr03:5895672–5899267 (+)1.839e-12
Glyma.03G046300 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr03:5909851–5912413 (+)1.839e-12
Glyma.03G046400 hypothetical protein AT2G38360:PRA1.B4:prenylated RAB acceptor 1.B4 1Chr03:5927092–5930714 (+)1.839e-12
Glyma.04G082000 hypothetical protein AT5G11560:AT5G11560:catalytics 1Chr04:6916238–6923979 (-)3.976e-11
Glyma.05G199000 hypothetical protein AT5G07360:AT5G07360:Amidase family protein 1Chr05:38299825–38306022 (+)7.47e-12
Glyma.05G200300 hypothetical protein AT5G61960:ML1:MEI2-like protein 1 1Chr05:38390264–38401841 (-)7.47e-12
Glyma.05G200500 hypothetical protein AT4G25080:CHLM:magnesium-protoporphyrin IX methyltransferase 1Chr05:38415657–38418787 (-)7.47e-12
Glyma.07G093100 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr07:8687539–8694278 (+)1.225e-13
Glyma.08G307700 Similar to 60S ribosomal protein L18a-1 AT2G34480:AT2G34480:Ribosomal protein L18ae/LX family protein 1Chr08:42603547–42605822 (+)2.196e-21
Glyma.19G077900 hypothetical protein NA 1Chr19:27982914–27988466 (-)1.133e-11