Overview Annotation GWAS Evidence Associated genes

P04859

Metabolite ID
P04859
Deionized mass
167.0570 Da
Average m/z
168.0642
Average RT
8.4165
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
11
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

11 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 4Chr03:5113019–5121557 (+)3.864e-14
Glyma.08G215300 hypothetical protein NA 3Chr08:17446603–17452442 (+)5.748e-11
Glyma.07G032200 hypothetical protein AT3G58990:IPMI1:isopropylmalate isomerase 1__AT2G43090:AT2G43090:Aconitase/3-isopropylmalate dehydratase protein 2Chr07:2530560–2533228 (+)7.399e-14
Glyma.03G040800 hypothetical protein AT3G23270:AT3G23270:Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein 1Chr03:5149644–5155590 (+)5.542e-12
Glyma.03G040900 hypothetical protein AT3G11740:AT3G11740:LURP-one-like protein (DUF567) 1Chr03:5164999–5166689 (-)5.542e-12
Glyma.03G041600 hypothetical protein AT2G38440:SCAR2:SCAR homolog 2 1Chr03:5283969–5291986 (+)5.542e-12
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)5.542e-12
Glyma.03G041900 hypothetical protein NA 1Chr03:5313339–5315847 (-)5.542e-12
Glyma.03G042300 hypothetical protein NA 1Chr03:5350737–5353536 (-)5.542e-12
Glyma.09G003500 hypothetical protein AT5G48030:GFA2:gametophytic factor 2 1Chr09:293205–300873 (+)3.407e-11
Glyma.16G189800 hypothetical protein AT5G52290:SHOC1:shortage in chiasmata 1 1Chr16:35226347–35234125 (-)4.74e-12