Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04766

Metabolite ID
P04766
Deionized mass
303.1651 Da
Average m/z
304.1719
Average RT
8.3339
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)5.478e-11
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)1.497e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)5.621e-16
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.413e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 2Chr13:31727841–31735910 (-)6.115e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.222e-12
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.63e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)1.559e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.965e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.965e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.632e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.669e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.903e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.788e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)6.338e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)4.761e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.586e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.872e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.998e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.507e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.508e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.385e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.27e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.27e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.27e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.393e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.818e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.623e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.623e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.623e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)1.653e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.328e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)9.298e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.907e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)5.493e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)7.645e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)6.611e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.442e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.45e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.365e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)9.553e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.563e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.562e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.597e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.597e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.621e-16
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.246e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)8.229e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)5.779e-14
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)6.115e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.259e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.222e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.804e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.809e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)5.504e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.328e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.697e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.828e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.63e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.341e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.625e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.625e-12
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)1.089e-11
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)1.089e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)2.124e-12
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)4.806e-12
Glyma.18G265900 hypothetical protein NA 1Chr18:55040041–55042737 (-)6.092e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.918e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.181e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.687e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.687e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)5.019e-13