Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P04686

Metabolite ID
P04686
Deionized mass
84.0204 Da
Average m/z
169.0488
Average RT
8.2797
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.781e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.809e-13
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)3.215e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.32e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)4.162e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)1.052e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.288e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.781e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.406e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.406e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.924e-11
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)9.911e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.554e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.926e-12
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)2.795e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.866e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.572e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)7.822e-12
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)3.817e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.104e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.104e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.104e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)9.07e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.978e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.538e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.809e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.809e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.809e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.809e-13
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)6.096e-11
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)7.498e-13
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)3.683e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)7.902e-12
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)6.21e-11
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)6.21e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.454e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.454e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.131e-11
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)6.442e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)7.706e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.56e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.56e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.56e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.56e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.48e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.709e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)6.928e-11
Glyma.11G105500 hypothetical protein AT2G16640:TOC132:multimeric translocon complex in the outer envelope membrane 132 1Chr11:8015639–8020644 (-)3.868e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)5.808e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)5.808e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)5.808e-11
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)1.529e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.827e-15
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.826e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.509e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.509e-15
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.8e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.8e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.595e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.973e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)9.501e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.962e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.962e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)8.648e-15
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.32e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.35e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.009e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.025e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.554e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.458e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.968e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)3.385e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)9.401e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)4.654e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.379e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.379e-12